Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTIKLNPLNAIDFYKADHRRQYPAGTEYVYANFTPRSSRLAKMLPDFDDKVVFFGLQGFIKHFLIDTWNEGFFKQPKDKVVAAYKRRM-DSSLGEGAVPVDHIEALHDLGYLPLRIKALPEGSRVNMRVPVLTVINTDPRFFWLTNYIETVLSAELWKSCTTATIAYEYKRLLTQYAVKTGAPLDFVPVQGHDFSSRGMSGIYDAAQSGVGHLTSFIGTDSVASIDYAEEYYNATG-VIGVSVPATEHSVMCMGTEDNELETFKRLICELYPSGVVSIVSDTWDFWRVITE-FTVALKPEILARQPNALGLAKLVFRPDSGDPVKIICGDPDAKVGSPAYKGAVECLWEVFGGTTTDQGYKVLNECVGLIYGDSITLDRAQRILEGLETKGFASNNLVFGIGSFTYNYLTRDTFGFAVKATWGQVNGVGRELFKDPITDSGVKKSAKGLLRIEESENG-FTLFDQQTAEQEQGGA--LKTVFENGKLQYECTLDQIRERLSIA
4N9D Chain:B ((8-482))---EFNILLATDSYKVTHYKQYPPNTSKVYSYFECREK--------KYEETVFYGLQYILNKYLK---GKVVTKEKIQEAKDVYKEHFQDDVFNEKGW--NYILEKYD-GHLPIEIKAVPEGFVIPRGNVLFTVENTDPECYWLTNWIETIL-VQSWYPITVATNSREQKKILAKYLLETSGNLDGLEYKLHDFGYRGVSSQETAGIGASAHLVNFKGTDTVAGLALIKKYYGTKDPVPGYSVPAAEHSTITAWGKDHEKDAFEHIVTQ-FSSVPVSVVSDSYDIYNACEKIWGEDLRHLIVSRSTQA----PLIIRPDSGNPLDTVLK-------------VLEILGKKFPVTENSKGYKLLPPYLRVIQGDGVDINTLQEIVEGMKQKMWSIENIAFGSGGGLLQKLTRDLLNCSFKCSYVVTNGLGINVFKDPVADPN-KRSKKGRLSLHRTPAGNFVTLEEGKGDLEEYGQDLLHTVFKNGKVTKSYSFDEIRKNAQL-


General information:
TITO was launched using:
RESULT:

Template: 4N9D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2516 35903 14.27 78.22
target 2D structure prediction score : 0.64
Monomeric hydrophicity matching model chain B : 0.77

3D Compatibility (PKB) : 14.27
2D Compatibility (Sec. Struct. Predict.) : 0.64
1D Compatibility (Hydrophobicity) : 0.77
QMean score : 0.467

(partial model without unconserved sides chains):
PDB file : Tito_4N9D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4N9D-query.scw
PDB file : Tito_Scwrl_4N9D.pdb: