Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNIQALLLITSAIFISACSPYIVTANPNYSASKSDEKA--EKIKNLFNEAHTTGVLVIQQGQTQQSYGNDLARASTEYVPASTFKMLNALIGLEHHKATTTEVFKWDGQKRLFPEWEKNMTLGDAMKASAIPVYQDLARRIGLELMSNEVKRIGYGNADIGTQVDNFWLVGPLKITPQQEAQFAYKLANKTLPFSQKVQDEVQSMLFIEEKNGNKIYAKSGWGWDVNPQVGWLTGWVVQPQGNIVAFSLNLEMKKGISSSVRKEITYRGLEQLGIL
4Y0U Chain:C ((39-277))-------------------------------------IIDQNVQALFNEISADAVFVTYDGQNIKKYGTHLDRAKTAYIPASTF-IANALIGLENHKATSTEIFKWDGKPRFFKAWDKDFTLGEAMQASTVPVYQELARRIGPSLMQSELQRIGYGNMQIGTEVDQFWLKGPLTITPIQEVKFVYDLAQGQLPFKPEVQQQVKEMLYVERRGENRLYAKSGWGMAVDPQVGWYVGFVEKADGQVVAFALNMQMKAGDDIALRKQLSLDVLDKLGVF


General information:
TITO was launched using:
RESULT:

Template: 4Y0U.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1247 43489 34.87 184.28
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain C : 0.83

3D Compatibility (PKB) : 34.87
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.83
QMean score : 0.634

(partial model without unconserved sides chains):
PDB file : Tito_4Y0U.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4Y0U-query.scw
PDB file : Tito_Scwrl_4Y0U.pdb: