Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMYLQDIDQQNMEGRKMKDMDIKAVFIG---DKAENGPVYKMLLNKMVDEHLGWRENY-------IPSDMP-AISEGDKL-TPDYLATRDHMIEVLDEVSQRLRAGSIPWHSAGRYWGQMNAETLMPALLAYNYAMLWNPNNVALESSMATSQMEAEVGQDFASLFNMT--DGWGHIAADGSIANLEGLWYARCIKSIPLAVKEVLPEKVKKMSEWELLNLSVEEILEMTESFTDEEMDEVKAASSRSGKNIQRLGKWLVPQTKHYSWMKALDICGVGLDQMVAIPVQEDYRMDINALEKTIRELAGQKIPILGVVAVVGTTEEGQVDSVDKIVQLRERLKDEGIYFYLHVDAAYGGYARSLFLNEAGEFVPYASLAEFFEEHHVFHHCVTIDKEVYEGFRAISEADSVTIDPHKMGYVPYAAGGIVIKHKNMR-NIISYFAPYVFEKSV--KAPDMLGAYILEGSKAGATAAAVWTAHRVLPLNVTGYGQLIGASIEAAQRFREFLDHL-TFTVKGKTIEVYPLNHPDFNMVNWVFKEQGC---TDLNAINELNEKMFDRSSYMDGDVYGERFITSHTTFTQEDYGDSPIRFVERMGLTKEEWKKEQKITLLRAAIMTPYLNDDRIFNFYTKKIAKAMEKKLNEIIQ
3VP6 Chain:B ((7-501))---------------------SNLFARDLLPAKNGEEQTVQFLLEVVDILLNYVRKTFDRSTKVLDFHHPHQLLEGMEGFNLELSDHPESLEQILVDCRDTLK-YGVRTG-HPRFFNQLSTGLDIIGLAGEWLTSTANTNMFTYEIAPVFVLMEQITLKKMREIVGWSSKDGDGIFSPGGAISNMYSIMAARYKYFPEVKT---------------------------------------------KGMAAVPKLVLFTSEQSHYSIKKAGAALGFGTDNVILIKCNERGKIIPADFEAKILEAKQKGYVPFYVNATAGTTVYGAFDPIQEIADICEK-----YNLWLHVDAAWGGGLLMS-------------------------------RKHRHKLNGIERANSVTWNPHKMMGVLLQCSAILVKEKGILQGCNQMHASYLFQQDKHYDVSYDTGDKAIQCGRH-VDIFKFWLMWKAKGT--VGFENQINKCLELAEYLYAKIKNREEFE-------MVFNGEPEHTNVCFWYIPQS-DSPQRREKLHKVAPKIKALMMES------GTTMVGYQPQG-------------------------DKANFFRMVISNPAATQSDI-----DFLIEEIERL------


General information:
TITO was launched using:
RESULT:

Template: 3VP6.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2392 13369 5.59 28.51
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain B : 0.66

3D Compatibility (PKB) : 5.59
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.418

(partial model without unconserved sides chains):
PDB file : Tito_3VP6.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3VP6-query.scw
PDB file : Tito_Scwrl_3VP6.pdb: