Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEIIRVKNAEEGGKKAFEIIKEGMNKGAK------VLGLATGSTPVTLYKEMT----SSDLDFSEMTSVNLDEYVGLGGSDEQSYRHFMDVQLFDKK--PFKETFVPDGKAEDLEAACKKYDQIIDAH-PIDIQILGIGQNGHIGFNEPGASFDGTTSVVDLTESTINANKRFFDK-AEDVPTKAVSMGIGSIMKSKEIVLMAFGESKADAIKGMIEGPVTNHLPASVLQNHDNVVVIIDEEAASKL
1HOT Chain:B ((1-247))MRLIPLTTAEQVGKWAARHIVNRINAFKPTADRPFVLGLPTGGTPMTTYKALVEMHKAGQVSFKHVVTFNMDEYVGLPKEHPESYYSFMHRNFFDHVDIPAENINLLNGNAPDIDAECRQYEEKIRSYGKIHLFMGGVGNDGHIAFNEPASSLASRTRIKTLTHDTRVANSRFFDNDVNQVPKYALTVGVGTLLDAEEVMILVLGSQKALALQAAVEGCVNHMWTISCLQLHPKAIMVCDEPSTMEL


General information:
TITO was launched using:
RESULT:

Template: 1HOT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1233 46817 37.97 200.93
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain B : 0.82

3D Compatibility (PKB) : 37.97
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.82
QMean score : 0.663

(partial model without unconserved sides chains):
PDB file : Tito_1HOT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1HOT-query.scw
PDB file : Tito_Scwrl_1HOT.pdb: