Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMADFKAKEILLNAFDMNCVGHINHGLWTHPRDESHRFNELSYWTEQAKTLENGLFDGLFIADITGVYDVYQNGIDLTLKESIQLPSHDPSTLISAMAAVTQNLSFGVTVNLSYEHPYQFARRFASLDHLTQGRIGWNIVTGYLDSAERLIGQKGLKDHDARYEQAEEFLELCYKYWEGSWENDAVKKDKARRVFTDPSKVHTIHHHGKYYQSEGVFQVSPSVQ-RTPTLFQAGASPKGMQFATRHAECVFIGGDKPEKIREQVKKIRTLAEQQGRSANDIKVFVGITVVVAETHDLAVQKLNEYRQYASPEAGLAHYASSTGIDLSKFADDEAIPYQKSNSIVSITE-KF-KEQQITKNDLKAQHVLGGRYPLIVGSGEEVAEYLIHLLDETDIDGFNLTRTVAPESHHDFIRLVIPELQQHGRYKTAYKTGSLRNKIFNRGDHLPEQHPVQAFRCSPYNNSKNLTKIEEITA
1NQK Chain:A ((3-362))--------LNMFWFLPT----HGDGHYLGTE-EGSRPVDHGYLQQIAQAADRLGYTGVLIPTGR--------------------SCEDAWLVAASMIPVTQRLKFLVALRPSVTSPTVAARQAATLDRLSNGRALFNLVTGSDPQELAGDGVF--LDHSERYEASAEFTQVWRRLLQR----------------------ETVDFNGKHIHVRGAKLLFPAIQQPYPPLYFGGSSDVAQELAAEQVDLYLTWGEPPELVKEKIEQVRAKAAAHGRK---IRFGIRLHVIVRETNDEAWQAAERLISHLDDET-IAKAQAAFAR-----------------------DNLEISPNLWAGVGLVR----GGAGTALVGDGPTVAARINEYAA-LGIDSFVLSGYPHLEEAYRVGELLFPLLDVAIPE------IPQPQPL-----------------------------------


General information:
TITO was launched using:
RESULT:

Template: 1NQK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1897 -71465 -37.67 -210.19
target 2D structure prediction score : 0.63
Monomeric hydrophicity matching model chain A : 0.69

3D Compatibility (PKB) : -37.67
2D Compatibility (Sec. Struct. Predict.) : 0.63
1D Compatibility (Hydrophobicity) : 0.69
QMean score : 0.434

(partial model without unconserved sides chains):
PDB file : Tito_1NQK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1NQK-query.scw
PDB file : Tito_Scwrl_1NQK.pdb: