Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKSAFKRFVQ-QSPSTVKDNVFAVVAYCPINNLANADLGYEWQYNASRNDSNTGNLN------------GVSYSAGPQLTASKEIAEKFPMYLQTLNLKLPNGQQLTAE-----NMPDQIKEQIKSEIERQLAKGTPVPNFGENFVSSKATLVNDWLKHDGSKVTEIDYQKFLNYVAANQALKTVVAFDAVGVNGNTAISGETNLFGDSQNEYNNFTQWSWDHNSKTADGSGQDDTGLSWENYLNSNSSTANLLKDQLKMVNPIAYLNTT-TDTAPYWYIRHGVLDRDTSFAMQMILYYAVTNDPKVKDTNFKLPYLTGHAGNYDVQEAFKWINEKLNTTQ
4J0D Chain:B ((202-491))---YFEPALTALGAAPATDDIFAVSAYCPIHNLEHADMAYEWQFNGINDWHRYQPVAGTTKNGRPKFEPVSGQLTVEEQALSLALKAQFSTYLNQLKLTASDGTHLTLNEAGMGSFRDVVRQLLISSAQTAFDQG-------------TDIHKYAGFVVTGNQVTDLDLSAYLKSL---TRMKAVPAFDQLDL-----TSPENNLFGDATAKAKHFTALAQTRSTVT----A------------------QLADAELIQAINPLSYLTTTSSQVAKHWRIRHGAADRDTSFAIPIILAIMLEN--HGYGIDFALPWDIPHSGDYDLGDLFSWIDGLCQ---


General information:
TITO was launched using:
RESULT:

Template: 4J0D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1225 17449 14.24 64.39
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain B : 0.73

3D Compatibility (PKB) : 14.24
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.440

(partial model without unconserved sides chains):
PDB file : Tito_4J0D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4J0D-query.scw
PDB file : Tito_Scwrl_4J0D.pdb: