Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPSNNLEGMNEVKTIYLDHAATTPMHPQVIEAMTAIMQDTFGNPSSIHGFGRHAHEKLETARQIIADSLQAKPHEIIFNSGGTEGDNTAILET--AFSRQKEGR---HLITTAIEHPAVLNTMKYL-ETKGFDVTYLPVDE-KGNLSIEEVKKALREDTILVSVMYGNNEIGNLMPIKEIGELL---------ADHP-AYFHTDAVQAYGNQTIHPEELGIDLLSISAHKINGPKGVGFLYKRDGVN----IPALLLGGEQEEKRRAGTENLAGIWGMAKAVELLSPEEREARNNKYKGFQQLILDTLEA---NEIPYQVNGDLTNKLPHVLNLRLIGEANDLLLMKLDLNGVAISTGSACTAGNIE-PSHVLEAMYGEDTPILKESIRISFGLGNTEDDIQYFLDQLVRAVKK
3A9Y Chain:B ((18-427))------------RKVYMDYNATTPLEPEVIQAVTEAMKEAWGNPSSSYVAGRKAKDIINTARASLAKMIGGKPQDIIFTSGGTESNNLVIHSTVRCFHEQQ---TRPHFITCTVEHDSIRLPLEHLVEDQVAEVTFVPVSKVNGQVEVEDILAAVRPTTCLVTIMLANNETGVIMPISEISRRIKALNQIRAASGLPRVLVHTDAAQALGKRRVDVEDLGVDFLTIVGHKFYGPR-IGALYVR-GVGKLTPLYPMLFGGGQERNFRPGTENTPMIAGLGKAADLVS-ENCETYEAHMRDIRDYLEERLEAEFGKRIHLNSRFPGVERLPNTCNFSIQGSQLRGYMVLAQCQTLLASVGASCHSDHEDRPSPVLLSC-GIPVDVARNAVRLSVGRSTTRAEVDLIVQDLKQAVNQ


General information:
TITO was launched using:
RESULT:

Template: 3A9Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 2164 30637 14.16 82.80
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain B : 0.81

3D Compatibility (PKB) : 14.16
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.81
QMean score : 0.531

(partial model without unconserved sides chains):
PDB file : Tito_3A9Y.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3A9Y-query.scw
PDB file : Tito_Scwrl_3A9Y.pdb: