Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKDIYVEFRGKY--KVDGESRDSEHKGWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMVFVKDLDATSPKLWEACSAGYTFDEVQIDFYRANGDKRIKYLQIKLKHVLVSSVTPTVNE-EGVPTEAFGLKYAAVEWTYNQQDINGTAKGAVTKKWSLSNNTASYAA
4HKH Chain:F ((2-154))AIPVYLWLKDDGGADIKGSVDVQDREGSIEVVAQEHCLYIPTD-------GKLTGTRIHTPFLFTKEIDSSSPYLYKAVTTGQTLKSAEFKWYKI---QEVEYFNTKLENVKVVKVNPVMHDI-HNHLEQVELRYEKITWTYKDGNIIHS--------------------


General information:
TITO was launched using:
RESULT:

Template: 4HKH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain F - contact count / total energy / energy per contact / energy per residue : 611 19144 31.33 140.76
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain F : 0.72

3D Compatibility (PKB) : 31.33
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.478

(partial model without unconserved sides chains):
PDB file : Tito_4HKH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4HKH-query.scw
PDB file : Tito_Scwrl_4HKH.pdb: