Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MLNIISTNKAPNFQYTDEM-DRFLMNTL---AFSVGLVTEDYSTFDPEVLKIMEEEPDWLQESVAWCQSLVVGSLVDSGNYDDTGELMDEFNCLLNLYDRARQRELTSNE-DNLFLNIHDKFLALLLTDDELITNLLEVE------------------------------------------------------------------------------------------------------------------------------------------------------------ 5UDB Chain:C ((52-614)) VNVEKRWELYHQLHSHFHDQVDHIIDNIEADLKAEISDLLYSETTQKRRCFNTIFLLGSDSTTKIELKDESSRYNVLIELTPKESPNVRMMLRRSMYKLYSAADAEEHVSYDLSLVENFKRLFGKDLAMVFNFKDVDSINFNTLDNFIILLKSAFKYDHVKISLIFNINTNLSNIEKNLRQSTIRLLKRNYHKLDVSSNKGFKYGNQIFQSFLDTVDGKLNLSDRFVEFILSKMANNTNHNLQLLTKMLDYSLMSYFFQNAFSVFIDPVNVDFLNDDYLKILSRCPTFMFFVEG---------------LIKQHAPADEILSLLTNKNRGLEEFFVEFLVRENPINGHAKFVARFLEEELNITNFNLIELYHNLLIGKLDSYLDRWSACKEYKDRLHFEPIDTIFDNLLSWEQVLPSLDKENYDTLSGAPVLGQLFKLYREANMTINIYDFYIAFRETLPKEEILNFIRKDPSNTKLLELAETPDAFDKVALILFMQAIFAFENMGLIKFQSTKSYDLVEKCVWR

General information: TITO was launched using: RESULT: Template: 5UDB.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 168 2485 14.79 20.71 target 2D structure prediction score : 0.52 Monomeric hydrophicity matching model chain C : 0.54 3D Compatibility (PKB) : 14.79 2D Compatibility (Sec. Struct. Predict.) : 0.52 1D Compatibility (Hydrophobicity) : 0.54 QMean score : 0.235

(partial model without unconserved sides chains): PDB file : Tito_5UDB.pdb: (Unconserved sides chains are recalculated) : Sequence: align-5UDB-query.scw PDB file : Tito_Scwrl_5UDB.pdb: