Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-MAACTARRALAVGSRWWSRSLTGARWPRPLCAAAGAGAFSPASTTTTRRHLSSRNRPEGKVLETVGVFEVPKQNGK-YETGQLFLHSIFGYRGVVLFPWQARLY-----DRDVASAAPE-------------KAENPAGHGSKEVKGKTHTYYQVLI---------DARDCPHISQRSQTEAVTFLANHDDSRALYAIPGLDYVSHEDILPYTSTDQVPIQHELFERFLLYD----------QTKAPPFVARETLRAWQEKNHPWLELSDVHRETTENIRVTVIPFYMGMREAQN--------SHVYWWRYCIRLENLDSDVVQLRERHWRIFSLSGTLETVRGRGVVGREPVLSKEQPAFQYSSHVSLQASSGHMWGTFRFERPDGSHFDVRIPPFS---------LESNKDEKTPPSGLHW
5BYH Chain:M ((16-473))TPQLQQAIRLLQLSTLELQQELQQALESNPLLEQTDLHDEVEAKEVEDRESLDTVELPLDASWDEIYTAGTPSGNGVDYQDDELPVYQGETTQTLQDYLWQVELTPFTDTDRAIATSIVDAVDDTGYLTIQIEDIVDSIGDDEIGLEEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFAKETPWL----EEARLIISDHLDLLANHDFRTLMRVTRLK-EEVLKEAVNLIQSLDPRPGQSIQTSEPEYVIPDVLV--RKVSGRW----TVELNADSIPRLKINQQYAAGNSARNDADGQFIRSNLQEARWLIKSLESRNDTLLRVSRCIVEQQQAFFEQGEEYKPVLADIAQAVEHESTISRVTTASSTAIRALVKKLIAAENPAKPLSDSKLTSLSEQGIVARRTVAKYRESLSIPPSNQR


General information:
TITO was launched using:
RESULT:

Template: 5BYH.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain M - contact count / total energy / energy per contact / energy per residue : 918 11957 13.03 33.49
target 2D structure prediction score : 0.44
Monomeric hydrophicity matching model chain M : 0.64

3D Compatibility (PKB) : 13.03
2D Compatibility (Sec. Struct. Predict.) : 0.44
1D Compatibility (Hydrophobicity) : 0.64
QMean score : 0.064

(partial model without unconserved sides chains):
PDB file : Tito_5BYH.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5BYH-query.scw
PDB file : Tito_Scwrl_5BYH.pdb: