Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------MNDEASKQLTDTRFKRLVGVQRT-TFEEMLAVLKTAYQK-SRTSW--------------------------------------------------------------------------------------------------------------------------------------------------
4N9N Chain:A ((604-878))NLNLIDMKLFHHYCTKVWPTITAAKVSGPEIWRDYIPELAFDYPFLMHALLAFSATHLSRTETGLEQYVSSHRLDALRLLREAVLEISENNTDALVASALILIMDSLANASVDNIFEMLRIDEGLRLKIYKDTEGYYTIGIGHLLTKSPSLNAAKSELDKAIGRNTNGVITKDEAEKLFNQDVDAAVRGILRNAKLKPVYDSLDAVRRAALINMVFQMGETGVAGFTNSLRMLQQKRWDEAAVNLAKSRWYNQTPNRAKRVITTFRTGTWDAYV-------DSMSPSAWIFHVKGAATILTAVWPLSERSKFHNIISVDLSDLGDVINPDVGTITELVCFDESIADLYPVGLDSPYLITLAYLDKLHREKNQGDFILRVFTFPALLDKTFLALLMTGDLGAMRIMRSYYKLLRGFATEVKDKVWFLEGVTQVLPQ


General information:
TITO was launched using:
RESULT:

Template: 4N9N.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 57 3748 65.75 104.10
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.49

3D Compatibility (PKB) : 65.75
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.49
QMean score : 0.303

(partial model without unconserved sides chains):
PDB file : Tito_4N9N.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4N9N-query.scw
PDB file : Tito_Scwrl_4N9N.pdb: