Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNF-ARQHFRKHQAKSAAEQAAEFGSMKNATAYELQLMQL--NNDRARLKQIQSTENKIKLKAELLPTYAPYIDGILEAQSGVQDEILTEIMIWNIDTSNFSRALQIAEYVLVHNLALPDRFERTPACVITEEISAAFLKQLKTNVEIDIDVLKQLESLMTNPDLPEKTLDMPDQVKAKMYLALGKAEIRFISDKDKPDLVHTKAAADYLQKAVELDDKCGGRGDLNMVQKLLD---KFAPATEANKGDAAASS
2AGK Chain:A ((1-260))TKFIGCIDLHNGEVKQQHPSSYYAKLYKDRDVQGCHVIKLGPNNDDAAREALQESPQFLQVGGGINDT------NCLEWLKWASKVIVTSWLFTKEGHFQLKRLERLTELCGKDRIVVDLSCRKTQDGRWIVAMNK---WQTLTDLELNADTFRELRKYTNEFLIHAGGID----------ELLVSKLFEWTKDYDDLKIVYAGGAKS-VDDLKLVDELSHGKVDLTFGSSLDIFGGNLVKFEDCCRWNEKQG-


General information:
TITO was launched using:
RESULT:

Template: 2AGK.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1245 61653 49.52 271.60
target 2D structure prediction score : 0.43
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 49.52
2D Compatibility (Sec. Struct. Predict.) : 0.43
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.146

(partial model without unconserved sides chains):
PDB file : Tito_2AGK.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2AGK-query.scw
PDB file : Tito_Scwrl_2AGK.pdb: