Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MTTNFWKELPKPFFVLAPMEDVTDVVFRHVVKHAAAPDVFFTEFTNSDSFCHPDGKDSVRGR------LTFTEDEQPMVAHIWGDKPEFFREMSIAMAEMGFQGIDINMGCPVPNVAERGKGSGLILRPEVAAQLIEAAKA-G--GLPVSVKTRIGYTEMSEMEEWISHLLHQDIANLSVHLRTRKEMSKV-DAHWEVIPKIIALRDQIAPQTLITINGDIPDRQTGEELAEKYGVDGIMIGRGIFKNPYAFEKDPRE---HTEKELIGLLRLQLDLQDHYSEIIPRSITGLHRFFKIYIKGFPGANDLRVQLMNTKSTDEVREILETFEKEHPTLFSEQ 4YCO Chain:C ((6-319)) ----------SMRVLLAPMEGVLDSLVRELLTEVNDYDLCITEFVRVVDQLLPV--KVFHRICPELQNASRTPSGTLVRVQLLGQFPQWLAENAARAVELGSWGVDLNCGAPS----GSGGGATLLKDPELIYQGAKAMREAVPAHLPVSVKVRLGWDSGEKKFEIADAVQQAGATELVVHGRTKEQGYRAEHIDWQAIGDIRQRL-----NIPVIANGEIWDWQSAQQCMAISGCDAVMIGRGALNIPNLSRVVKYNEPRMPWPEVVALLQKYTRLEKQGDTGLY-HVARIKQWLSYLRKEYDEATELFQHVRVLNNSPDIARAIQAIDIE--------

General information: TITO was launched using: RESULT: Template: 4YCO.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1688 19526 11.57 65.74 target 2D structure prediction score : 0.64 Monomeric hydrophicity matching model chain C : 0.71 3D Compatibility (PKB) : 11.57 2D Compatibility (Sec. Struct. Predict.) : 0.64 1D Compatibility (Hydrophobicity) : 0.71 QMean score : 0.491

(partial model without unconserved sides chains): PDB file : Tito_4YCO.pdb: (Unconserved sides chains are recalculated) : Sequence: align-4YCO-query.scw PDB file : Tito_Scwrl_4YCO.pdb: