Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MNLIEQLQSKIEQARTLYKEFRLYDLGSFALNRFTPKDGFEQVLNVRYGLKPRHRLDIYRSTKR-LAHRPLIVFVHGGAWQHGNKRDYLFIGEAFTKE-GYDVAVINYQLAPKNIFPSYVDDLTQALNYLHQNQEKLEISTENIVLMGHSAGAFNVMSAVYHPKPNTIQCLGNIKAIFGLAGPYHFDYKGDPL----------------A-EDAFDQSI-SYK-EVMPYYFVN-QNHIKHYLLMAENDQLVKKENTFDLDQALRQSGNHSHIAVIPKTGHITILASLSSFVSHYFRTKRTILHFLDEVF 5JD4 Chain:C ((84-333)) ---------------------------------------------------SEIRFRRYRPLGEAAGLLPTLIYYHGGGFVIGNIETHDSTCRRLANKSRCQVISIDYRLAPEHPFPAPIDDGIAAFRHIRDNAESFGADAARLAVGGDSAGGAMAAVVCQACRDA---GETGPAFQMLIYPATDSSRESASRVAFAEGYFLSKALMDWFWEAYVPEDTDLTDLRLSPLLATDFTGLPPAFVLTAGYDPLR-DE-GRAYADRLIEAGIKTTYVNYPGTIHGFFSLTRF--LSQGLKANDEAAAVMGAH-

General information: TITO was launched using: RESULT: Template: 5JD4.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1340 -29015 -21.65 -127.26 target 2D structure prediction score : 0.62 Monomeric hydrophicity matching model chain C : 0.65 3D Compatibility (PKB) : -21.65 2D Compatibility (Sec. Struct. Predict.) : 0.62 1D Compatibility (Hydrophobicity) : 0.65 QMean score : 0.486

(partial model without unconserved sides chains): PDB file : Tito_5JD4.pdb: (Unconserved sides chains are recalculated) : Sequence: align-5JD4-query.scw PDB file : Tito_Scwrl_5JD4.pdb: