Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MSLLRLDRLHYCILMSMGCISSPLVWAEDLNSDVAKLPTLHVEATRTD----TGYLQTPASVFRIEAPQVDSSSQVNLTEVVKGIPSLQIRNRENYAQ---DLQLSMRGFGARSTFGVRGIRLYVDGIPATMP-DGQ--GQTSNIDLSSLDHVEVLTGPFSSLYG-NSSGGTILTSTKEGQGKDSIELSYSGGS-----HDK--SRAGLVLQGGAKGANEPSYIISSSYFDTDGYREHSGAEKVLNNAKLSWNLDDGSKINWVTNYVKINADDPGGLTRADWQNNPKQVVQNVLDYNARKEIEQTQTGLTWSKPINDQHELYAMTYMGQRQVTQYQSIPDTVQKNPNTPYQAGGVIDFKRNYYGADFRWTGKEL-LPN-TTLSIGVALDAMKEDRQGYQNFNDTGDK-GVKGALRRDEDNTLWNIDPYVQASWQFLPTWRLDTGVRYSNVHYKSKDYYIVGLNGDNSGKTSYEEVLPSVALSWQITPEVLAYASYAKGFETPTFTEMAYPAQGGASTLDLKPSTSDTYETGLKSQNQLGDFTLAVFQTKTKNDIVSAESFGGRSTFRNADKTLREGVEFAWNKKLW------RDLIAIASYTYLDATFDSTVPAAGKISEIPEGNAIPGIAKNQAYVSLAWQPSHGLYGGVDVQYMDKVYVNDT---------NSDAAPSYSVTSANVGYAWVMGDWKVNSFARVDNLFDRNYAGSVIVNDSTQPVGRYFEPADGRNWSAGLRVIKQF 1KMO Chain:A ((114-774)) --------------------------------------ALTVVGDWLGDARENDVFEHAGARDVIRREDFAKTGATTMREVLNRIPGVSAPENNGTGSHDLAMNFGIRGLNPRL---ASRSTVLMDGIPVPFAPYGQPQLSLAPVSLGNMDAIDVVRGGGAVRYGPQSVGGVVNFVTRAIPQDFGIEAGVEGQLSPTSSQNNPKETHNLMVGGTA--DNGFGTALLYSGTRGSDWREHSATRIDDLMLKSKYAPDEVHTFNSLLQYYDGEADMPGGLSRADYDADRWQ---STRPYD-RFWGRRKLASLGYQFQPDSQHKFNIQGFYTQTLRSGYLEQGK---------RI--TLSPRNYWVRGIEPRYSQIFMIGPSAHEVGVGYRYLNESTHEMRYYTATSSGQLPSGSSPYDRDTRSGTEAHAWYLDDKIDIG-NWTITPGMRFEHIESYQNNAIT-----GTHEEVSYNAPLPALNVLYHLTDSWNLYANTEGSFGTVQYSQIGKA----VQSGNVEPEKARTWELGTRYDDGALTAEMGLFLINFNNQYDSNQT---NDTVTARGKTRHTGLETQARYDLGTLTPTLDNVSIYASYAYVNAEIREKG--------DTYGNLVPFSPKHKGTLGVDYKPG-NWTFNLNSDFQSSQFADNANTVKESADGSTGRIPGFMLWGARVAYDFGPQMADLNLAFGVKNIFDQDYFIRSYDDN-----NKGIYAGQPRTLYMQGSLKF--

General information: TITO was launched using: RESULT: Template: 1KMO.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 4021 156133 38.83 249.81 target 2D structure prediction score : 0.46 Monomeric hydrophicity matching model chain A : 0.69 3D Compatibility (PKB) : 38.83 2D Compatibility (Sec. Struct. Predict.) : 0.46 1D Compatibility (Hydrophobicity) : 0.69 QMean score : 0.153

(partial model without unconserved sides chains): PDB file : Tito_1KMO.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1KMO-query.scw PDB file : Tito_Scwrl_1KMO.pdb: