Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence-------MTKKGSFMPASTSQYYTRT---------------AQILHWVM------------AIIFITAWVIGFYS-GNFLSYDVDGSFKGDVITLHKNIATTIIFLVVIRLFWRY----------THPAPQLPDTMSPTMKTLAHIGHLLLYVILVALPVTG-------------------CLFSWSAGHPAP--VLYLFEIPRLVQDNPEL-------LAIVKPLHIYISWFAGFLIVGHVLAALKHHFVDK------DNVLNSMTKQPK
5J9T Chain:C ((8-279))MTWNEYDKFYTGSFQETTSYIKFSATVEDCCGTNYNMDERDETFLNEQVNKGSSDILTEDEFEILCSSFEHAIHERQPFLSMDPESIL--SFEELKPTLIKSDMADFNLRNQLNHEINSHKTHFITQFDPVSQMNTRPLIQLIEKFGSKIYDYWRERKIEVNGYEIFPQLKFERPGIDPYVCFRRREVRHPRKTRRIDILNSQRLRALHQELKNAKDLALLVAKRENVSLNWINDELKIFDQRVKIKNLKRSLNISGEDDDLINHKRKRP-


General information:
TITO was launched using:
RESULT:

Template: 5J9T.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 529 -20629 -39.00 -109.15
target 2D structure prediction score : 0.57
Monomeric hydrophicity matching model chain C : 0.62

3D Compatibility (PKB) : -39.00
2D Compatibility (Sec. Struct. Predict.) : 0.57
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.234

(partial model without unconserved sides chains):
PDB file : Tito_5J9T.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5J9T-query.scw
PDB file : Tito_Scwrl_5J9T.pdb: