Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence---MSFVPQI---------KIPATYMRGGTSK----GVFFK-------------------LDDLPEKAQVAGQA--------RDQLLLRVI-------------GSPDPYGKQIDGMGGATSSTSKTVILAKSTQPDHDVDYLFGQVSID-----QAFVDWS---GNCGNLTAAVGSF---------AISNGLVDADRIPENGLCTVRIWQKNIQKTIIAHVPITNGQVQETGDFELDGVTFP-AAEVQIEFL------DPADDGEEGGDMFP-----TGNVVDQLD-----------------VPEIGSFQATFINAGIPTIFLNA-----EDL-------------GYEGTELQDHINGDAAALARFEKIRAYG----------------AVQMGLIKDISEAAARQHTPKIAFVSKPKNYTASSGKNVSENDVDL------LVRALSMGKLHHAMMGTAAVAIGTAAA----------------IPGTLVNLAAGGGERE----------AVRFGHPSGTLRVGAQ--------AELTNGQWVVKKAIMSRSARVLME---GWVRIPGDSS
3ZK4 Chain:A ((3-571))HAYIKATPNVLGFEGHYTEWVTLQYSNNKPSIDDWIGVFSPANFSASTCPGENKMTNPPFLCSAPIKFQYANFSSHSYKDTGKGSLKLQLINQRSDFSFALFTGGLTNP--KLIAVSNKVSFVNPNAPVYPRLAQGKTWDEITVTWTSGYDINDAEPFVEWGPKEGNLVKTPAGTLTFDRNTMCGAPARTVGWRDPGYIHTSFL---KELWPNREYTYKLGHRLFNGTTIWSKEYHFKASPYPGQSSVQRVVIFGDMGKAEADGSNEYNNFQPGSLNTTKQIIQDLEDIDIVFHIGDLCYANGYISQWDQFTAQIEPIASTVPYMTASGNHERDWPGTGSFYGNLDSGGECGVPAQTMFFVPAENREKFWYSTDYGMFRFCIAHTELDWRKGTEQYEFIEKCLASVDRQKQPWLIFLAHRVLGYSSAGFYVQEGSFEEPMGREDLQHLWQKYKVDIAMYGHVHNYERTCPIYQNVCTNKEKHNYKGNLNGTIHVVVGGGGASLAEFAPINTTWSIFKDHDFGFVKLTAFDHSNLLLEYRKSSDGQVYDSFTISRDYRDILACSVDSCPTTTLAS


General information:
TITO was launched using:
RESULT:

Template: 3ZK4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 2387 32313 13.54 82.85
target 2D structure prediction score : 0.46
Monomeric hydrophicity matching model chain A : 0.65

3D Compatibility (PKB) : 13.54
2D Compatibility (Sec. Struct. Predict.) : 0.46
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.206

(partial model without unconserved sides chains):
PDB file : Tito_3ZK4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3ZK4-query.scw
PDB file : Tito_Scwrl_3ZK4.pdb: