Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSSRGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSKGKLEAIITPPPAKKAKSPSQKKPVSKKAGGKKGARKSKKKQGEVSKAASADSTTEGTPADGFTVLSTKSLFLGQKLNLIHSEISNLAGFEVEAIINPTNADIDLKDDLGNTLEKKGGKEFVEAVLELRKKNGPLEVAGAAVSAGHGLPAKFVIHCNSPVWGAD--KCEELLEKTVKNCLALADDKKLKSIAFPSIGSGRNGFPKQTAAQLILKAISSYFVSTMSSSIKTVYFVLFDSESIGIYVQEMAKLDAN
5CB5 Chain:E ((9-180))--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TRIHVVQGDITK---LAVDVIVNAAAPSLMGGGGVAGAIHRAAGPALLDACLKVRQQQGDCPTGHAVITLAGDLPAKAVVHTVGPVWRGGEQNEDQLLQDAYLNSLRLVAANSYTSVAFPAISTGVYGYPRAAAAEIAVKTVSEFITRHA--LPEQVYFVCYDEENAHLYERLLTQQ---


General information:
TITO was launched using:
RESULT:

Template: 5CB5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain E - contact count / total energy / energy per contact / energy per residue : 935 -65392 -69.94 -384.66
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain E : 0.67

3D Compatibility (PKB) : -69.94
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.616

(partial model without unconserved sides chains):
PDB file : Tito_5CB5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5CB5-query.scw
PDB file : Tito_Scwrl_5CB5.pdb: