Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--------------------------------------MSFLSKNGAGILACLLISILSW---YLGGFFPVIGAPVFAIFIGMLLHPF---------LSSYKQLDAGLTFSSKKLLQYAVVLLGFGLNISQVFAVGQSSLPVILSTISIA------LIIAYLFQRFFALDTKLATLVGV---------GSSICGGSAIAATAPVI-HAKEKEVAQAISVIFFFNVLAALIFPT-------LGTWLHLSNEGFALFAGTAVNDTSSV-TAAASAWDSLYQSNTLESATIVKLTRTLAIIPITLFLSYWQSRQQENKQSLQL-KKVFPLFILYFILASLLTTLLTSLGVSSSFFTPLKQLSKFLIVMAMSAIGLKTNLVAMVKSSGKSILLGAICWIAIILTTLGMQTLIGIF
4XGC Chain:E ((1-458))MEAICSSLEPLFPCREAAIETLGELIGDSSETYPSAIYLFGHSGTGKTALTRAFLKECGKRQNVRTAHLNAIECYTTKIMLEILLDSLAPDQGDALKVDNMLDFVEQLRRQAATRVEDQGFLIAVD-NAERLRDMDANVLPVLLRLQELTNLNLCVILLSQLPFEKFYNKTGLSEIVCLHLAQYNKAETQRILGSDFQQVRNQLLEQKKRLEICQEAVTEDFYNNYLNLFLSVFYKACRDVPELQLTARKCLSTYLEPVLDGTSRLWRHIAGPLRSALTQIYMRIESLELPYYAKFLLIAAFLASHNAAKQDKRLFSTTLGPKSFSIDRLLAIFYAILEE---KVGLTCNLLSQISTLVHLNLLSFVSGEQNIMEGSARLQCT---IGLEFVLQIGKVVGFNVRQYLCD--


General information:
TITO was launched using:
RESULT:

Template: 4XGC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain E - contact count / total energy / energy per contact / energy per residue : 1275 -89643 -70.31 -274.14
target 2D structure prediction score : 0.49
Monomeric hydrophicity matching model chain E : 0.66

3D Compatibility (PKB) : -70.31
2D Compatibility (Sec. Struct. Predict.) : 0.49
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.235

(partial model without unconserved sides chains):
PDB file : Tito_4XGC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4XGC-query.scw
PDB file : Tito_Scwrl_4XGC.pdb: