Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MDIKIKREEIMKKFSKTLRDNWIFLLMVLPGALWLILFFYIPVFGNVVAFKDYHMTSNGFIDSIINSKWVGLDNFRFLFSSRD----AFIITRNTVLYNLGFIFLGLVVSVGIAIILSELRSKRMVKIFQTSMLFPYFLSWVIISFFTDAFLNIDKGVFNHLLESLGLKEVNFYADLGIWPYLLLFLGIWKGFGYSSVMYYATIMGIDPTYYEAATVDGASKWQRIRNVTIPQLTPLVTVLTILAVGNIFRADFGLFYQIPHN-AGQLY--------NVTNVLDVYVFNGLTQ---TADIGMAAAAGLYQSVVGLILVILSNLLARRVDPNSALF 4JBW Chain:F ((258-509)) --------------------------------------------------------------------TTGWKNFTRVFTDEGIQKPFLAIFVWTVVFSLITVFLTVAVGMVLACLVQWEAL-RGKAVYRVLLILPYAVPSFISILIFKGLFNQSFGEINMMLSALFGVKPAWFSDPTTARTMLIIVNTWLGYPYMMILCMGLLKAIPDDLYEASAMDGAGPFQNFFKITLPLLIKPLTPLMIASFA----FNFNNFVLIQLLTNGGPDRLGTTTPAGYTDLLVNYTYRIAFEGGGGQDFGLAAAIATLIFLLVGALAIVNLKAT----------

General information: TITO was launched using: RESULT: Template: 4JBW.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain F - contact count / total energy / energy per contact / energy per residue : 887 -116501 -131.34 -493.65 target 2D structure prediction score : 0.54 Monomeric hydrophicity matching model chain F : 0.65 3D Compatibility (PKB) : -131.34 2D Compatibility (Sec. Struct. Predict.) : 0.54 1D Compatibility (Hydrophobicity) : 0.65 QMean score : 0.253

(partial model without unconserved sides chains): PDB file : Tito_4JBW.pdb: (Unconserved sides chains are recalculated) : Sequence: align-4JBW-query.scw PDB file : Tito_Scwrl_4JBW.pdb: