Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPR-PAGAQGAGFPAQGGSQGGFGGQGAGFGGAQGAGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGHQGGFGGHQGGFDNDSKFEDGQDDENNR
4J6W Chain:B ((5-70))----HSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRL----------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4J6W.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 227 -42306 -186.37 -650.85
target 2D structure prediction score : 0.46
Monomeric hydrophicity matching model chain B : 0.73

3D Compatibility (PKB) : -186.37
2D Compatibility (Sec. Struct. Predict.) : 0.46
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.542

(partial model without unconserved sides chains):
PDB file : Tito_4J6W.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4J6W-query.scw
PDB file : Tito_Scwrl_4J6W.pdb: