Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSVIVLAGTIGAGKSSLTEMMAEHFD-SQAFYESIDDN------EVLPLFYANPEQYAFLLQIYFLNKRFASIKQA----M---KDDNNVLDRSIYED-SLLFHLNADLGRATETEVRVYDELLENMMEELPYAAHKKHPDLLVHIRVSFDTMLERIEKRGRSYEQLSFDPSLYDYYKELNRRYDQWYEEY---------KESPKIQIDGDRYNFVEDPQAKEEVLKMIEEKLAEIRQTKVAI
2OCP Chain:E ((2-239))PRRLSIEGNIAVGKSTFVKLLTKTYPEWHVATEPVATWQNIQLGNLLDMMYREPARWSYTFQTFSFLSRLKVQLEPFPEKLLQARKPVQIFERSVYSDRYIFAKNLFENGSLSDIEWHIYQDWHSFLLWEFA---SRITLHGFIYLQASPQVCLKRLYQRAREEEKG----IELAYLEQLHGQHEAWLIHKTTKLHFEALMNIPVLVLDVNDDF-SEEVTKQEDLMREVNTFVK---------


General information:
TITO was launched using:
RESULT:

Template: 2OCP.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain E - contact count / total energy / energy per contact / energy per residue : 897 16095 17.94 79.68
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain E : 0.70

3D Compatibility (PKB) : 17.94
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.513

(partial model without unconserved sides chains):
PDB file : Tito_2OCP.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2OCP-query.scw
PDB file : Tito_Scwrl_2OCP.pdb: