Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMFFQIQYKSSTRDGGNNVNGLFITIEGPDGAGKTSILNELYPLLKEVAKTEIIQTREPGGIPIAEEIRAVILDPKNDRMDERTEALLYAAARRQHLVEKVLPALAKGKIVLCDRFVDSSLAYQGAGRRIGVTEIARLNEFATEGTTPDFTLYLDVDSDTGLRRIKKNRQNQIDRLDSEGLEFHQRVRHAYLKLAEENPERIHKVDARKSFEEVLQTSYHTIIEQYPQFFEN
4HDC Chain:B ((4-200))---------------------FITFEGPEGSGKTTVINEVYHRL--VKDYDVIMTREPGGVPTGEEIRKIVLE-GND-MDIRTEAMLFAASRREHLVLKVIPALKEGKVVLCDRYIDSSLAYQGYARGIGVEEVRALNEFAINGLYPDLTIYLNVSAEVGRERIIKNS-------DQEDLKFHEKVIEGYQEIIHNESQRFKSVNADQPLENVVEDTYQTIIK--------


General information:
TITO was launched using:
RESULT:

Template: 4HDC.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 906 -82046 -90.56 -429.56
target 2D structure prediction score : 0.70
Monomeric hydrophicity matching model chain B : 0.85

3D Compatibility (PKB) : -90.56
2D Compatibility (Sec. Struct. Predict.) : 0.70
1D Compatibility (Hydrophobicity) : 0.85
QMean score : 0.576

(partial model without unconserved sides chains):
PDB file : Tito_4HDC.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4HDC-query.scw
PDB file : Tito_Scwrl_4HDC.pdb: