Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequence--MNMTFIVAVQLKDSIVVAVDNKYLTLKDKEKD---HFEEHFSSKLYAWHSGI----ITGTGEHYVIDKAVR----LFINSADADIEKLPLCLNISRQIREMEVGQHEQIQSSK------LLYSQYSENGAKLFAIEPTEETGKYQRTEFKENDLIIWLF-NPNIQSIS--GNLKTLYSNPR----------PKVSFDRIEDWLDYYISAIAEIYEKQSCIDSWMSGSFDIFFQTEGEYFYKHIQNNPTVHLE--------------------------------------
3E4R Chain:A ((25-315))AAEPAQLRIGYQKAVSSLVLAKQHR-LLEQRFPRTKITWVEFPAGPQLLEALNVGSIDLGGAGDIPPLFAQAAGADLLYVGWVPPTPKAETILVPSKSALRTVADLKGKRIAFQKGSSAHNLLLRVLAKSGLSMRDITPLYLSPANARAAFAAGQVDAWAIWDPWYSALTLDGSARLLANGEGLGLTGGFFLSSRRYATAWGPFVQQVMGTLNQADGLLERDRAGSIKTLAQVSGLPPAVVERTLAHRPPASVQPLSAQVIKAQQATADLFYAQRLLPKRVLVAPAVWRAPD


General information:
TITO was launched using:
RESULT:

Template: 3E4R.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1206 6759 5.60 30.58
target 2D structure prediction score : 0.43
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : 5.60
2D Compatibility (Sec. Struct. Predict.) : 0.43
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.214

(partial model without unconserved sides chains):
PDB file : Tito_3E4R.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3E4R-query.scw
PDB file : Tito_Scwrl_3E4R.pdb: