Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKPV------PKIYRTTNWSSYNQA-----LIKRGNISIWFDPKTQWYAQPQGKHGRNQTYSDAAIQCCLMIKSLFRLSLRMVTGFAQSLIKLCGLNWTAPDYSTLCRRQKRIDIAISYQQSRDGLHLLVDSTGLKFLGEG---EWKRKKHQPAYRRQWRKLHIGIDAKTLQIRAVQLTTNNVSDSQVLGDLLDQIPLDERIDSVYTDGAYDTKHCRQVIL-DRDAHAVIPPRKNAKPWKDKKLRSLARNELLKTVKRLGRSLWKKWSGYHRRSLVETKMHCIK
5GNG Chain:A ((1-214))MKTKFYDYQGEHLILYFAGWGTPPDAVNHLILPENHDLLICYD------YQDLNLDFDLSAYRH--IRLVAWSMGVW-VAERVLQGI--RLKSATAVNGTGLPCDD--------SFGIPYAIFKGTLENLTENTRLKFERRICGDKASFERYQLFPARPFDEIHQELTALFAMIQQ-----------------------DKRIDLI---------HWANAWVSSRDK--IFTPANQHQYWALRCAVQEIEGEHY-VFSR-----FTHWSALWD------------


General information:
TITO was launched using:
RESULT:

Template: 5GNG.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 989 23558 23.82 118.38
target 2D structure prediction score : 0.32
Monomeric hydrophicity matching model chain A : 0.67

3D Compatibility (PKB) : 23.82
2D Compatibility (Sec. Struct. Predict.) : 0.32
1D Compatibility (Hydrophobicity) : 0.67
QMean score : 0.097

(partial model without unconserved sides chains):
PDB file : Tito_5GNG.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5GNG-query.scw
PDB file : Tito_Scwrl_5GNG.pdb: