Modeling by threading (Tito software) Unconserved sides chains calculation (Scwrl software) Evaluation (QMean software) Input alignment information: Query sequence MDNPEISVVPVPETEIKKITLKN-DYLEVVLLNYGARLHQIFAPDKEGKSENVLLSYDRFEDVLTDKSFFGATVGPVAGRIRDASWG----EHRLEKNCGSHHIHGGTKGWSFQFWEVEVFKTPSSIGVVFY--LKDEFSTYPGPITATITYRLTKN-ELEMTTSASSLVETICNPTNHAYFNLSGNGTRDIYEHQLTVFLDGVLELD-QEKLPTGNWTKKEKLPIDFRKSPTLQEILA---CY--P-DGLDDVFLLHHPRLSKTSLQLFEKHSGRQMTIATSNKSMVLFSTTGFEADFSVNGKQMHSNYGLAIEPQEIPDIVHFPKFGSINLHPGQERISQTIYRFSAQ 1NSU Chain:B ((10-338)) -------------LGSDLISLTNKAGVTISFTNLGARIVDWQKDGK-----HLILGFDSAKEYLEKDAYPGATVGPTAGRIKDGLVKISGKDYILNQNEGPQTLNGGEESIHTKLWTYEVTDLGAEVQVKFSLVSNDGTNGYPGKIEMSVTHSFDDDNKWKIHYEAISDKDTVFNPTGHVYFNLNGDASESVENHGLRLAASRFVPLKDQTEIVRGDIVDIKNTDLDFRQEKQLSNAFNSNMEQVQLVKGIDHPFLLDQLGLDKEQARLTLD--DTSISVFTDQPSIVIFTANFGDLGTLYHEKKQVHHGGITFECQVSPGSEQIPELGDISLKAGEKYQATTIYSLHT-

General information: TITO was launched using: RESULT: Template: 1NSU.pdb Alignment : align.pir Tito was launched with SMD and SCWRL Tito text output Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 1900 77815 40.96 247.82 target 2D structure prediction score : 0.62 Monomeric hydrophicity matching model chain B : 0.76 3D Compatibility (PKB) : 40.96 2D Compatibility (Sec. Struct. Predict.) : 0.62 1D Compatibility (Hydrophobicity) : 0.76 QMean score : 0.432

(partial model without unconserved sides chains): PDB file : Tito_1NSU.pdb: (Unconserved sides chains are recalculated) : Sequence: align-1NSU-query.scw PDB file : Tito_Scwrl_1NSU.pdb: