Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMLEKDIERILISQEEIQVRCKELGKELTEIYQNTNP--LVVGVLKGAVPFMADIVRSIDTYLELDFMDVSSYGNATVSSGEVKIVKDLDTNVEGRDLLIVEDIIDSGRTLAYLVDLFKYRKAKSVKIVTLLDKPEGRVVNIEADYVGFNVPNEFVVGYGLDYAEAYRNLPYIGVLKPSVYQSN
5KNS Chain:B ((11-175))--------VMIPEAEIKARIAELGRQITERYKDSGSDMVLVGLLRGSFMFMADLCREVQVSHEVDFMTAS------STTRDVKILKDLDEDIRGKDVLIVEDIIDSGNTLSKVREILSLREPKSLAICTLLDKPSRREVNVPVEFIGFSIPDEFVVGYGIDYAQRYRHLPYIG----------


General information:
TITO was launched using:
RESULT:

Template: 5KNS.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 734 -41009 -55.87 -261.20
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain B : 0.84

3D Compatibility (PKB) : -55.87
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.489

(partial model without unconserved sides chains):
PDB file : Tito_5KNS.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5KNS-query.scw
PDB file : Tito_Scwrl_5KNS.pdb: