Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMEDFVMKFWQRLFTAFLQRFHLMRFFGRNRSFKELHQSSYAQEISKNLSKRLLNASRAQTNDLLKQFDTHLMGLTEEQAYTQQMTVGLNEVTHEKPLTWWQHLWYCYRNPFNILLSLLALIAFFTD-------DLTGSTIISVMVILSTLLRYWQEAKSNQAADALKAMVSNTATVLRHQVSAEDLELMHERYGIDTKNQTTHQFEISIQYLVPGDVILLSAGDMIPADCRILSAKDLFVSQAAMTGESMPVEKFPLQKNLEETSALELDNIVFMGTNIVSGSAQAVVLSTGIQTYFGALAHRVTATDRSTTAFQMGVNKVSWLLIRFMLVMAPVVLFINGF-TKGDWAEAFLFALSVAVGLTPEMLPMIVTSTLAKGAVFLSKKKVIVKRLDAIQNFGAMDVLCTDKTGTLTQDKIFLSQHIDV---QGEKSDFVLMQAFLNSYYQTGLKNLLDVAVLEAVDDQIKIQKLRYKKLDEVPFDFDRRRMSVVVKTPQQKAHMITKGAVEEMLKVCRYVEVNGKVEPLTKQREVAIEALTQRYNRDGLRVVAVAYREFKNHQENYSVVDESDLILIGYITFLDPPKESAKEAVQSLHAHGVTVKVLTGDNEFVTQKVCREIGLNYDQ----VLLGGVIE-TLTDQQLKRAVEQYHIFAKLSPVHKERIVEQLKVNGHVVGFLGDGINDAAAIRAADIGISVDTAVDIAKESADLILLEKSLMVLEKGVIEGRRTFANMLKYIKMTASSNFGNVFSVLIASAFIPFLPMLPIHLLIQNLLYDVSQIVIPFDNVDEELIAKPQRWQPEEVGRFMVVFGPISS-IFDMITFGVMWFVFSA---N--------TPEHQTLFQSGWFVVGLLTQTLIVHMIRTAQIPFIQSRAATPLLIMTAVIMCIGIFLPMGPLASYLKLQALPLSYFLYLPLILGAYICVTQWVKKIYIRRYGWQ
5KSD Chain:B ((2-832))-----------------------------------------------------DLEKIPIEEVFQQLKCSREGLTTQEGEDRIQIFGPNKLEEKK-ESKLLKFLGFMWNPLSWVMEMAAIMAIALANGDGRPPDWQDFVGIICLLVINSTISFIEENNAGNAAAALMAGLAPKTKVLR------D----------------GKWSEQEAAILVPGDIVSIKLGDIIPADARLLEGDPLKVDQSALTGESLPVTKHPGQ-------------EVFSGSTCKQGEIEAVVIATGVHTFFGKAAHLVDS-TNQVGHFQKVLTAIGNFCICSIAIGMVIEIIVMYPIQRRKYRDGIDNLLVLLIGGIPIAMPTVLSVTMAIGSHRLSQQGAITKRMTAIEEMAGMDVLCSDKTGTLTLNKLSVDKNLVEVFCKGVEKDQVLLFAAMASR--VENQDAIDAAMVGMLADPKE-ARAGIREVHFLPFNPVDKRTALTYIDGSGNWHRVSKGAPEQILELAKASN----------DLSKKVLSIIDKYAERGLRSLAVARQVVPEK---TKESPGAPWEFVGLLPLFDPPRHDSAETIRRALNLGVNVKMITGDQLAIGKETGRRLGMGTNMYPSSALLGTHKDANLASIPVEELIEKADGFAGVFPEHKYEIVKKLQERKHIVGMTGDGVNDAPALKKADIGIAVADATDAARGASDIVLTEPGLSVIISAVLTSRAIFQRMKNYTIYAVSITIRIVFGFMLIALIWE-FDFSAFMVLIIAILNDGTIMTISKDRVKPS--PTPDS----WKLKEIFATGVVLGGYQAIMTVIFFWAAHKTDFFSDTFGVRSIRDNNHELMGAVYLQVSIISQAL-IFVTRSRSWSFVE-RPGALLMIAFLIAQLIATLIAVYANWEFAKIRGIGWGWAGVIWLYSIVTYFPLDVFKFAIRY-----


General information:
TITO was launched using:
RESULT:

Template: 5KSD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain B - contact count / total energy / energy per contact / energy per residue : 4231 -142582 -33.70 -177.56
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain B : 0.73

3D Compatibility (PKB) : -33.70
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.367

(partial model without unconserved sides chains):
PDB file : Tito_5KSD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5KSD-query.scw
PDB file : Tito_Scwrl_5KSD.pdb: