Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAQQRRGGFKRRKKVDYIAANKIEYVDYKDTELLSRFVSE-RGKILPRRVTGTSAKNQRKVTTAIKRARVMALMPFVNED
5AJ3 Chain:R ((56-127))-----ENPYKEPLKKCILCEK---HVDYKNVQLLSQFISPFTGCIYGRHITGLCGKKQKEITKAIKRAQILGFMPVTYKD


General information:
TITO was launched using:
RESULT:

Template: 5AJ3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain R - contact count / total energy / energy per contact / energy per residue : 222 -10780 -48.56 -151.82
target 2D structure prediction score : 0.68
Monomeric hydrophicity matching model chain R : 0.84

3D Compatibility (PKB) : -48.56
2D Compatibility (Sec. Struct. Predict.) : 0.68
1D Compatibility (Hydrophobicity) : 0.84
QMean score : 0.466

(partial model without unconserved sides chains):
PDB file : Tito_5AJ3.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5AJ3-query.scw
PDB file : Tito_Scwrl_5AJ3.pdb: