Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTKFNNNQSDNLFSQVFGVAKKLSSTGLNILQQSQIGEVSKLVEPLSNGKTVEGSARNKSPFEVEQYESPLQMLREHLPKVT---RQVFGRHFRKVNGIATFISPDWNEKISSYLFDWLNDFSSKSTLTEKILEEAGAKDLFELTKDTSRSQRLSQALIEQNKLIASIQGAITGVSGMVGAAVDIPVSLVLVLRTIYQTGRSHGFDLTEATDQDVVEFIFKEVDISLIAEKQTLLLALKALRNMLETQDIQQFQQVLGSSNDIETLKSWLVDENGKFKWNWLNKVPQLAVVGKFTPVAGAVLS-AVYSWKLQEDVGHKAQAIFGAARHYLNEHPNEHLSPLQAYYAAVTLIQKASPRLLNVGENGSVHATQHHKIENHDVISKVSVVVKSNTSEKSEEKVQENV----------HQGIEHLAEKHVVEHEHSEQKPALEPESEENDDVIEGQKYS--
1BKD Chain:S ((568-1044))--RLPSADVYRFAEPDSEENIIFEEGIPIIKA----GTVIKLIERLTYHMYADPNFVRTFLTTYRSFCKPQELLSLIIERFEIPEPRFRKEYIQPVQLRVLNVCRHWVEHHFYDFERDAYLLQRMEEFIGTVRGKAMKKWVESITKIIQRKKITFQSSPPTVEWHISRPGHIETFDLLTLHPIEIARQLTLLESDLYRAVQPSELVGSVWTKEDKEINSPNLLKMIRHTTNLTLWFEKCIVETENLEERVAVVSRIIEILQVFQELNN----------FNGVLEVVSAMNSSPVYRLDHTFEQIPSRQKKILEEAHELSEDHYKKYLAKLRSINPPCVPFFGIYLTNILKTEEGNPEVLKRHGKELINFSKRRKVA--EITGEIQQYQNQPYCLRVESDIKRFFENLNPMGNSMEKEFTDYLFNKSLEIEPRNPKPLPRFPKKYSYPLKSPGVRPSN


General information:
TITO was launched using:
RESULT:

Template: 1BKD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain S - contact count / total energy / energy per contact / energy per residue : 1797 16096 8.96 38.05
target 2D structure prediction score : 0.52
Monomeric hydrophicity matching model chain S : 0.63

3D Compatibility (PKB) : 8.96
2D Compatibility (Sec. Struct. Predict.) : 0.52
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.206

(partial model without unconserved sides chains):
PDB file : Tito_1BKD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1BKD-query.scw
PDB file : Tito_Scwrl_1BKD.pdb: