Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMQQSRCNSIKDHLEFGSMNNMKYTYKPNYFFFAHKLV---LFLKDYLLKH----------PTEQNTTFNLQTIYDVFSHD----LASSTTNLEGILNIAD-----------------EYVLETEEGLLPLISS------------HSINLKNHVLSLEFSPKALTSLLSGRSLVNPKAA-------
5KCI Chain:A ((16-199))--GWKWEQIKEIIESGELARLKRSRQMTDKYHEHKKRTAGLDMNQYVLQKLGWSLDEPQLENAAAKAFSSSTLYAVRANDFPYNFEPGVVHLVLWSKVALPVHSPDKAVREAARARMNAFLQAQPLLRPLLSSGHVAWFVNYPELQSVARIFHAHVLLFFPRERYSAEQVKTTVDDILSHGFEPLA


General information:
TITO was launched using:
RESULT:

Template: 5KCI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 322 -6091 -18.91 -46.49
target 2D structure prediction score : 0.50
Monomeric hydrophicity matching model chain A : 0.63

3D Compatibility (PKB) : -18.91
2D Compatibility (Sec. Struct. Predict.) : 0.50
1D Compatibility (Hydrophobicity) : 0.63
QMean score : 0.148

(partial model without unconserved sides chains):
PDB file : Tito_5KCI.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5KCI-query.scw
PDB file : Tito_Scwrl_5KCI.pdb: