Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKPEFLESAEFYNRRYHNFSSSVIVPMALLLVFLLGFATVAEKEMSLSTRATVEPSRILANIQSTSNNRILVNHLEENKLVKKGDLLVQYQEGAEGVQAESYASQLDMLKDQKKQLEYLQKSLQEGENHFPEEDKFGYQATFRDYISQAGSLRASTSQQNETIASQNAA-ASQTQAEIGNLISQTE-AKIRDY-QTAKSAIETGTSLAGQNLAYSLYQSYKSQGEENPQTKVQAVAQVEAQISQLESSLATYRVQYAGSGTQQAYASGLSSQLESLKSQHLAKV-----GQELSLLAQKILEAESGKKVQGNLLDKGKITASEDGVLHLNPETSDSSMVAEGTLLAQLYPSLEREGKAKLTAYLSSKDVARIKVGDSVR--YTTTHDAGNQLFLDSTITSIDATATKTEKGNFFKIEAETNLTSEQAEKLRYGVEGRLQM----------ITGKKSYLRYYLDQFLNKE
4KRT Chain:A ((7-353))HHHHHMQS------RNNNNLKGIDV--------------------------------------SNWKGNINFESVKND------GVEVVYIKATEG----------NYFKDK-----YAKQNYEGAKEQGL---SVGFYHFFR-------ANKGAKDQANFFIDYLNEIGAVNYDCKLALDIETTEGVGVRDLTSMCIEFLEEVKRLTGKEVVVYTYTSFANNN--------------------LDSRLGNYPVWIAHYGVNTPGANNIWSSWVGFQYSENGSVAGVNGGCDMNEFTEEIFIDSS------NFNLDNATTKNVSTKLNIRAKGTTNS---------------------KIIGSIPAGETFKIKWVDEDYLGWYYVEYNGVVGYVNADYVEKLQMATTYNVSTFLNVREEGSLNSRIVDKINSGDIFRIDWVDSDFIGWYRITTKNGKVGFVNAEFVKKL


General information:
TITO was launched using:
RESULT:

Template: 4KRT.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1626 45752 28.14 139.91
target 2D structure prediction score : 0.36
Monomeric hydrophicity matching model chain A : 0.66

3D Compatibility (PKB) : 28.14
2D Compatibility (Sec. Struct. Predict.) : 0.36
1D Compatibility (Hydrophobicity) : 0.66
QMean score : 0.139

(partial model without unconserved sides chains):
PDB file : Tito_4KRT.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4KRT-query.scw
PDB file : Tito_Scwrl_4KRT.pdb: