Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDNPEISVVPVPETEIKKITLKN-DYLEVVLLNYGARLHQIFAPDKEGKSENVLLSYDRFEDVLTDKSFFGATVGPVAGRIRDASWG----EHRLEKNCGSHHIHGGTKGWSF---QFWEVEVFKTP--SSIGVVFY-L-K---DEFSTYPGPITATITYRLTKN--ELEMTTSA-S-SLVETICNPTNHAYFNLSGNGTR-DIYEHQLTVFLDGVLELDQ-EKLPTGNWTKKEKLPIDFRKSPTLQEILACYPDGLDDVFLLHHPR-----------LSKTSLQLFEKHSGRQMTIATSNKSMVLFSTTGFEADFSVNGKQMHSNYGLAIEPQEIPDIVHFPKF-GSINLHPGQERISQTIYRFSAQ
1YGA Chain:A ((7-342))------------DNKYGVITIGDEKKFQATIAPLGATLVDLKVNGQ-----SVVQGYSNVQDYLTDGNMMGATVGRYANRIAKGVFSLDDGPHKLTVNNCGNTNHSS---ISSLNLKQYKASPVENPSKGVYVVEFKLLDDHTQPNPNEFPGDLEVTVKYTLNVAEMTLDMEYQAQLVRGDATPINMTNHSYFNLNKVKSEKSIRGTEVKVCSNKSLEVTEGALLPTGKIIERNIATFDSTKPTVLHEDT----PVFDCTFIIDANKDLKTTDSVSVNKLVPVFKAYHPESHIKFEVSTTEPTVHLYTGDNL-------CGKFVPRSGFAVQQGRYVDAINRDEWRGCVLLKRGEVYTSKTQYKFDI-


General information:
TITO was launched using:
RESULT:

Template: 1YGA.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1708 34833 20.39 114.96
target 2D structure prediction score : 0.58
Monomeric hydrophicity matching model chain A : 0.72

3D Compatibility (PKB) : 20.39
2D Compatibility (Sec. Struct. Predict.) : 0.58
1D Compatibility (Hydrophobicity) : 0.72
QMean score : 0.453

(partial model without unconserved sides chains):
PDB file : Tito_1YGA.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1YGA-query.scw
PDB file : Tito_Scwrl_1YGA.pdb: