Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMARLKARYNDELKAKLQEELSIKNVMEIPRITKITLNMGVGAAATDKKLLDGAVADMQLIAGQKPVVTLARKSIAGFKIRDGWPIGCKVTLRGDQMYEFLDRLISIAIPRIRDFRGFSAKSFDGRGNYSMGLKEQIVFPEIDFDKIDRIRGMDITITTTARTDDEGRALMRAFGFPFK
5MMI Chain:F ((54-231))INRLKTNYIEKMVPLLKEEFSYSNILEVPKVVKIVVNCGIGDASQNAKGLDAAINELALITGQRPVKTKAKTSIAGFKVREGMTLGIAVTLRGNLMYSFLDRLINLALPRTRDFQGVNPNSFDGHGNYSVGFREQSVFPEIKPEIVGKARGMDVCITTTAKTDKEAYKLLSLMGMPFR


General information:
TITO was launched using:
RESULT:

Template: 5MMI.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain F - contact count / total energy / energy per contact / energy per residue : 748 -96563 -129.09 -542.49
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain F : 0.88

3D Compatibility (PKB) : -129.09
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.88
QMean score : 0.583

(partial model without unconserved sides chains):
PDB file : Tito_5MMI.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5MMI-query.scw
PDB file : Tito_Scwrl_5MMI.pdb: