Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKPVPKIYRTTNWSSYNQALIKRGNISIWFDPKTQWYAQPQGKHGRNQTYSDAAIQCCLMIKSLFRLSLRMVTGFAQSLIKLCGLNWTAPDYSTLCRRQKRIDIAISYQQSRDGLHLLVDSTGLKFLGEGEWKRKKHQPAYRRQWRKLHIGIDAKTLQIRAVQLTTNNVSDSQVLGDLLDQIPLDERIDSVYTDGAYDTKHCRQVILDRDAHAVIPPRKNAKPWKDKKLRSLARNELLKTVKRLGRSLWKKWSGYH-RRSLVETKMHCIK
5AF3 Chain:A ((11-238))-LRFDVPLYTLAEASRYLV--VPRATLATWADQPIITALPHPTGSH-------------ARLPFVGIAEAYVLNAFRRAGVPM-----------------QRIRPSLDWLIKNVGPHALASQD----------LCTDGAEVLWRFAERSGEGSPDDLVVRGLIVPRSGQYVFKEIVEHYLQQISFAD--DNLASMIRLPQYGDANVVLD-------PRRGYGQPVFDG---SGVRVADVLGPLRAGATFQAVADDYGVTPDQLRDALDA--


General information:
TITO was launched using:
RESULT:

Template: 5AF3.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1061 -77568 -73.11 -364.17
target 2D structure prediction score : 0.53
Monomeric hydrophicity matching model chain A : 0.61

3D Compatibility (PKB) : -73.11
2D Compatibility (Sec. Struct. Predict.) : 0.53
1D Compatibility (Hydrophobicity) : 0.61
QMean score : 0.212

(partial model without unconserved sides chains):
PDB file : Tito_5AF3.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5AF3-query.scw
PDB file : Tito_Scwrl_5AF3.pdb: