Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMDNLNSPEQSDLSWLTIWSTFLNQAPFTAQTQAPEAACFLQQLIEASLQGDSCIDISPEQIETLGQLVISAEQAKSQVAPCVHDGQGLALYRYWNLEQRLAEQIRRLKQQPIQPVSCEEHLDLLTDPHQRTALQMVTRQSLSIITGGPGTGKTYTLARIIAVLSQAI--PHIRVAMAAPTGKAAQRMQEALQNSFNDPKLLESGLMSDELRN---QSTQTIHRLLGM-GHSQTPRFNQKQPLPYDVIVVDEASMLDLNLATLLFEAVPESCRIILLGDANQLASVDVGAVLADL-------------QQIEALSENRVH----------------LQTSRRFAEGALIGQVARFIQMQTSQIDHEQVLQQFEIDIVQVSELRSIPLEADMPDVVQLEYLPEESPIALETYYQKLMVGFQGYVQSLKAYLQDDHSLEHIENIVKSFDDYRILTAVRHGPFGLQQLNQYAERWLQQQLGIVTLGGWYVGRPVMMTYNDYQLGISNGDIGLCFEHRTQPQQFEVYFPSLN-KWVAANRLPKSIQSAFALTIHKSQGSEFTHTAVVLDQAAKNLLSQELIYTAITRAKKVVSLLVDPEALLQSFTVRTTRKSGLVEKVNRLVR
5MBV Chain:D ((155-602))--------------------------------------------------------------------------------------------------------------------------------QKVAAAVALTRRISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLG------KALRQLPLTDEQKKRIPEDASTLHRLLGAQPGSQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARVIFLGDRDQLASVEAGAVLGDICAYANAGFTAERARQLSRLTGTHVPAGTGTEAASLRDSLCLLQK-------SGIGQLAAAIN-RGDKTAVKTVFQQ------------------DFTDIEKRLLQSGEDYIAM---LEEALAGYGRYLDLLQARAEPDL-------IIQAFNEYQLLCALREGPFGVAGLNERIEQFMQQKRKIHR---WYEGRPVMIARNDSALGLFNGDIGIALD-RGQGTRVWFAMPDGNIKSVQPSRLPEH-ETTWAMTVHKSQGSEFDHAALILPSQRTPVVTRELVYTAVTRARRRLSLYADERILSAAIATRTERRSGLA--------


General information:
TITO was launched using:
RESULT:

Template: 5MBV.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 1864 14537 7.80 36.34
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain D : 0.74

3D Compatibility (PKB) : 7.80
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.515

(partial model without unconserved sides chains):
PDB file : Tito_5MBV.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5MBV-query.scw
PDB file : Tito_Scwrl_5MBV.pdb: