Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKLNKFNFLKENIRNLYSSGVIYLSLLISFIPPILLTFFILK-TQGTSLGIKHISNFYAMLGM-LMAVIHANRVISRDFSHNTVSLFYNQQK-NRMIYVLSNFLYAISVSIIYALNGIVLLVIVSKLGIPGDLGLDFIVAIVVNTILLVLFYFLLSYIFYLYKLKSGLVFGILVALLLFIPNILNTMMMNT-SNDLFIKAIELLPFYSLPVFVAS-----NTM-------------------------S-ISQYLVLITTIILLYFFTLKKSKKYSF
5DO7 Chain:D ((399-668))--QQFTTLIRRQISNDFRDLPTLLIHGAEACLMSMTIGFLYFGHGSIQLSFMDTAALLFMIGALIPFNVILDVISKCYSERAMLYYELEDGLYTTGPYFFAKILGELPEHCAYIIIYGMPTYWLANLR----PGLQPFLLHFLLVWLVVFCCRIMALAAAALLPTFHMASFFSNALYNSFYLAGGFMINLSSLWTVPAWISKVSFLRWCFEGLMKIQFSRRTYKMPLGNLTIAVSGDKILSVMELDSYPLYAIYLIVIGLSGGFMVLYYVSLRFIK-


General information:
TITO was launched using:
RESULT:

Template: 5DO7.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain D - contact count / total energy / energy per contact / energy per residue : 926 -158880 -171.58 -676.08
target 2D structure prediction score : 0.69
Monomeric hydrophicity matching model chain D : 0.62

3D Compatibility (PKB) : -171.58
2D Compatibility (Sec. Struct. Predict.) : 0.69
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.253

(partial model without unconserved sides chains):
PDB file : Tito_5DO7.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5DO7-query.scw
PDB file : Tito_Scwrl_5DO7.pdb: