Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSKGQTLQDPFLNSLRKERIPVSIFLVNGIKLQGHIESFDQYVVLLKNTVSQMVYKHAISTVVPARNPR-PAGAQGAGFPAQGGSQGGFGGQGAGFGGAQGAGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGQGGFGGHQGGFGGHQGGFDNDSKFEDGQDDENNR
4J5Y Chain:A ((4-71))---GHSLQDPYLNTLRKERVPVSIYLVNGIKLQGQIESFDQFVILLKNTVSQMVYKHAISTVVPSRPVRLP---------------------------------------------------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 4J5Y.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 242 -40237 -166.27 -600.55
target 2D structure prediction score : 0.51
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : -166.27
2D Compatibility (Sec. Struct. Predict.) : 0.51
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.489

(partial model without unconserved sides chains):
PDB file : Tito_4J5Y.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4J5Y-query.scw
PDB file : Tito_Scwrl_4J5Y.pdb: