Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMSFTRSQIFLACALASSLLFSACSKENKPQKEDALTATAPATGEASTIIERNAKQRLIETLQKQFKNANINVKILDIKPTEVPNLYWVNLEGMTSVYTTSDGKYLIQGDVIRLGGKELHNIGDSLQASENKKHLAALKNEDLIAYPAKGGKAKHVIYVFTDVSCPYCHKLHEHLAEINEKSIEVRYIAWPR---GEQFMPTMEAVWCSADRKAAFNQAVQGINIPPAQCKNPVREQYQLGLNMGVNGTPAIYNVDGEYLGGYLTPDELIKRLDK
1JZD Chain:A ((10-208))-------------------------------------------------------------------AKMGIKSSDIQPAPVAGMKTV-LTNSGVLYITDDGKHIIQGPMYDVSGTAPVNVTNKMLL----KQLNALEKE-MIVY--KAPQEKHVITVFTDITCGYSHKLHEQMADYNALGITVRYLAFPRQGLDSDAEKEMKAIWCAKDKNKAFDDVMAGKSVAPASCDVDIADHYALGVQLGVSGTPAVVLSNGTLVPGYQPPKEMKEFLDE


General information:
TITO was launched using:
RESULT:

Template: 1JZD.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 924 -69274 -74.97 -353.44
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.76

3D Compatibility (PKB) : -74.97
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.671

(partial model without unconserved sides chains):
PDB file : Tito_1JZD.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1JZD-query.scw
PDB file : Tito_Scwrl_1JZD.pdb: