Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMCNKASSDLTDYVIRQLGRTKNKRYEAYVVSRIIHLLNDFTLKFVTQQFVRLSNK--KIALTDLYFPQLGIHIEVDEGHHFLRNSKMEYSLNQIDEPLYSISQTESDAMREEDIISITGHKIFRVNVFKNQEGQPQNLENIHQQIDKIIEEIKTAKNKLIEASTFKEWNIETEYNPQTYIDLGRISLADNVVLKTTKDVCNCFGYSYKNYQRGGALHPYK--------KDTLIWFPRLYENKDWINTISPDGLTITEKSTDETITLKKLEEWKNGPQKRIVFARVKDNLSSRAMYRFMGLYEFQKADLKDGA-VWKRVKCEVQTYSPKETKC
4OKY Chain:C ((4-289))---------TDYILRALSKISHKRWEHYIINRVVHTLDDPDIEFVCQQCIRKEGHLGKIYLADLLFPQLNLYLEID------NDAR------------------KADAVRRLDIVEATGFQEERI------PASNITLSEVNKLVDEFVRLVKDKKEELENQGLFFRWDYDERYSAKKHINTGYMAVGPNSVFRYHRDALQCFGYRR---QSGGWALPAEVAQSIGLTGRVMVWFPRLYEAGEWKNALSADGNKITEQSLNATRNYQ--ETW----DYRIVMAHSRDEL-NRTLYRFLGVFAIDVDKSSDEVKVFSRVYSRVNVY-------


General information:
TITO was launched using:
RESULT:

Template: 4OKY.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1145 22571 19.71 85.17
target 2D structure prediction score : 0.60
Monomeric hydrophicity matching model chain C : 0.76

3D Compatibility (PKB) : 19.71
2D Compatibility (Sec. Struct. Predict.) : 0.60
1D Compatibility (Hydrophobicity) : 0.76
QMean score : 0.418

(partial model without unconserved sides chains):
PDB file : Tito_4OKY.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4OKY-query.scw
PDB file : Tito_Scwrl_4OKY.pdb: