Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKDIYVEFRGKYKVDGESRDSEHKGWLEVNSWSHNIRQPKSATSSSVGGHTAERVEHSDMVFVKDLDATSPKLWEACSAGYTFDEVQIDFYRANGDKRIKYLQIKLKHVL-VSSVTPTVNEEGVPTEAFGLKYAAVEWTYNQQDINGTAKGAVTK-KWSLSNNTASYAA
1Y12 Chain:A ((12-162))-------------VKGESKDKTHAE--EIDVLAWSWGMSQSGSMHMGGGG-AGKVNVQDLSFTKYIDKSTPNLMMACSSGKHYPQAKLTIRKAGGENQVEYLIITLKEVLVSSVSTGGSGGEDRLTENVTLNFAQVQVDYQPQKADGAKDGGPVKYGWNIRQNVQA---


General information:
TITO was launched using:
RESULT:

Template: 1Y12.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 573 7470 13.04 50.47
target 2D structure prediction score : 0.61
Monomeric hydrophicity matching model chain A : 0.74

3D Compatibility (PKB) : 13.04
2D Compatibility (Sec. Struct. Predict.) : 0.61
1D Compatibility (Hydrophobicity) : 0.74
QMean score : 0.483

(partial model without unconserved sides chains):
PDB file : Tito_1Y12.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1Y12-query.scw
PDB file : Tito_Scwrl_1Y12.pdb: