Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMIISKDIKMLALVTGASAGFGYSISKKLIESG---YNVIGCGRRAEKLEELQKQLGENF-----YPLVFDMTDTAENINKLFKELPNEFQIDQIDLLVNNAGLALGLEPADKADLDDWYTMIDTNVKGFVTVTRLILPSMVKKKSGLIINMGSIAGTYPYPGGNVYGATKAFVEQFSLNLRADLAGTGVRVTNIEPGLCGGTEFSLVRFKGDQEKANSLYDKKNPILPEDIANTVAWIASQPPHININRIEMMPTTQTFNPLKVVEVE
3RKU Chain:A ((33-278))-------KKTVLITGASAGIGKATALEYLEASNGDMKLILAARRLEKLEELKKTIDQEFPNAKVHVAQLDITQ-AEKIKPFIENLPQEFK--DIDILVNNAGKALGSDRVGQIATEDIQDVFDTNVTALINITQAVLPIFQAKNSGDIVNLGSIAGRDAYPTGSIYCASKFAVGAFTDSLRKELINTKIRVILIAPGLV-ETEFSLVRYRGNEEQAKNVYKDTTPLMADDVADLIVYATSRKQNTVIADTLIFPTNQ-----------


General information:
TITO was launched using:
RESULT:

Template: 3RKU.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1241 4580 3.69 19.24
target 2D structure prediction score : 0.73
Monomeric hydrophicity matching model chain A : 0.80

3D Compatibility (PKB) : 3.69
2D Compatibility (Sec. Struct. Predict.) : 0.73
1D Compatibility (Hydrophobicity) : 0.80
QMean score : 0.611

(partial model without unconserved sides chains):
PDB file : Tito_3RKU.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3RKU-query.scw
PDB file : Tito_Scwrl_3RKU.pdb: