Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKIALFYMGGTFGCIGEPLAPMPYDQFLPQLEKVIP--------------------------PHLTVDCFAAPNIVDSSACTAPDWLRLIQRIQQLQLEGYQHFVVIHGTDTLSYAAATLARFLGQ-SCHIVITGSQYPLLNIQGDNTREFTDAIENLYLALEQVIAL-LVGAYLAFHHQVFHAQTALKTHTTELDAFSGLSSNVEFTPQQNEL----I--V--QDAQI--EKAASFQLLNWMMQPIATQHLVQQLRHLLPAPPHFLVLQGFGTGNIAVNDEFLATLDELYTRGCVPILATQVTFGGIDQRYAISTWAKTAKIVINDAHSHADLYAKALQIYLKY-PTPEQWLNHWNENLH
4R8K Chain:C ((31-378))ERHLLLIYTGGTLGMQSKGGVLVPGPGLVT-LLRTLPMFHDKEFAQAQGLPDHALALPPASHGPRVLYTVLECQPLLDSSDMTIDDWIRIAKIIER-HYEQYQGFVVIHGTDTMASGASMLSFMLENLHKPVILTGAQVPIRVLWN-------DARENLLGALLVAGQYIIPEVCLFMNSQLFRGNRVTKVDSQKFEAFCSPNLSPLATVGADVTIAWDLVRKVKWKDPLVVHSNMEHDVALLRLYPGIPASL---VRAFLQPPLKGVVLETFGSGNGPSKPDLLQELRAAAQRGLIMVNCSQCLRGSVTPGYAT--SLAGANIVSGLDMTSEAALAKLSYVLGLPELSLERRQELLAKDLR


General information:
TITO was launched using:
RESULT:

Template: 4R8K.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1595 -76678 -48.07 -248.15
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain C : 0.71

3D Compatibility (PKB) : -48.07
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.71
QMean score : 0.416

(partial model without unconserved sides chains):
PDB file : Tito_4R8K.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4R8K-query.scw
PDB file : Tito_Scwrl_4R8K.pdb: