Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMAYDMVSSTNLDKNIIGVHLMIHSKIIGIGVITGLCSMAALAEPAVQPGDTLESLSKVKVTTTVSGQPGSISDLVNSGQVQQVSAAPTDAVPPAPNQAAPAPQDPNTPPPAANPNQSADPMAKDGALPADAPMPQAQ-
5LQZ Chain:W ((11-71))----------LDWTKIVSKLGLSGQ-----------TAAALTSFKKRNDEAKRILFELKQQPSNVDFAFYKSTLKNTAIVDKIQSDVSKFTPSKANLSKQLNLIESFEAKALENAKETESVVLAELTDLEKTLENIES


General information:
TITO was launched using:
RESULT:

Template: 5LQZ.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain W - contact count / total energy / energy per contact / energy per residue : 44 -4430 -100.67 -72.61
target 2D structure prediction score : 0.34
Monomeric hydrophicity matching model chain W : 0.62

3D Compatibility (PKB) : -100.67
2D Compatibility (Sec. Struct. Predict.) : 0.34
1D Compatibility (Hydrophobicity) : 0.62
QMean score : 0.147

(partial model without unconserved sides chains):
PDB file : Tito_5LQZ.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5LQZ-query.scw
PDB file : Tito_Scwrl_5LQZ.pdb: