Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMITMDDIIREGNPTLREVAKEVSLPLSEEDISLGKEMLEFLKNSQDPIKAEELHLRGGVGLAAPQLDISKRIIAVHVPSPDPEADGPSL-STVMYNPKILSHSVQDACLGEGEGCLSVDREVPGYVVRHAKITVSYYDMNGEKHKIRLKNYESIVVQHEIDHINGVMFYDHINDQNPFALKEGVLVIE
1SV2 Chain:A ((5-167))------ILRMGDPILRKISE----PVTEDEIQT-KEFKKLIRDMFDTMRHAE-----GVGLAAPQIGILKQIVVVGSEDNERYPGTPDVPERIILNP-VITPLTKDTS-GFWEGCLSVP-GMRGYVERPNQIRMQWMDEKGNQFDETIDGYKAIVYQHECDHLQGILYVDRLKDTKLFGFNE------


General information:
TITO was launched using:
RESULT:

Template: 1SV2.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 800 -38790 -48.49 -239.44
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain A : 0.78

3D Compatibility (PKB) : -48.49
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.78
QMean score : 0.412

(partial model without unconserved sides chains):
PDB file : Tito_1SV2.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-1SV2-query.scw
PDB file : Tito_Scwrl_1SV2.pdb: