Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMKKRNNSQNLIMLKHDFASHIEDLKCATKPRSEALGRHLWTCTI--DADFYWLKFHLPNVHAQSEQDFLHELQFYEDITYKKANWLLPFKIIEGRTISQQTQFQGKVLVLPDTECWFDDLDQ---KQNLKNINEKIYLALVKLAELHELGWIHGDIKKEHFRKFK-QELYLIDFEKTRLISSP-----DPITDATPRYMAPELFHGANKTVQSDLYALGIVLYEWLT-QTRLQANSYHEWAVLHC-QKLNVELPSS-FQIFLPLLSGLLQKQQQNRFSNVHEAINCLKALST
3BKB Chain:A ((106-372))-------------KDKWVLNHEDLVLGEQIGRGNFGE-VFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSH--PNIVRLIGVCTQ------KQPIYIVMELVQGGDFLTFLRTEGARLRVKTLLQMVGDAAAGMEYLESKCCIHRDLAARNCLVTEKNVLKISDFGMSREEADGVYAASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQQTREFVEKGGRLPCPELCPDAVFRLMEQCWAYEPGQRPS-FSTIYQELQSI--


General information:
TITO was launched using:
RESULT:

Template: 3BKB.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 1258 -6141 -4.88 -24.27
target 2D structure prediction score : 0.59
Monomeric hydrophicity matching model chain A : 0.70

3D Compatibility (PKB) : -4.88
2D Compatibility (Sec. Struct. Predict.) : 0.59
1D Compatibility (Hydrophobicity) : 0.70
QMean score : 0.394

(partial model without unconserved sides chains):
PDB file : Tito_3BKB.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3BKB-query.scw
PDB file : Tito_Scwrl_3BKB.pdb: