Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMPAVPHSSLNPVLIQLEQVSVHRDQ---RDILKKVDFALHENEIVTLIGPNGAGKSTLIKVLLGILKPSSGRVISN-----------KKLKMAYVPQKFNPSHSLPLRVQDLLDLEKCS---PALRQEIIQDT-----------GIAKLQQSKVQQLSGGERQRVLLARALLRKPDILVLDEPMQGLDIQSEAELYEYVRSLPERYGCAILIVSHDLQWVMQGTQRVVCLN-KHICCSGLPESIQQHPEYQAIFGTHRVFYQHHHDHCAHGDAAHPCPHNNRPHIHPEPEA
5U1D Chain:A ((500-731))----------EGLVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEHRYLHRQVAAVGQEPQV---FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLVE-QADHILFLEGGAIREGGTHQQLME---------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 5U1D.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain A - contact count / total energy / energy per contact / energy per residue : 965 4257 4.41 20.97
target 2D structure prediction score : 0.62
Monomeric hydrophicity matching model chain A : 0.73

3D Compatibility (PKB) : 4.41
2D Compatibility (Sec. Struct. Predict.) : 0.62
1D Compatibility (Hydrophobicity) : 0.73
QMean score : 0.442

(partial model without unconserved sides chains):
PDB file : Tito_5U1D.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-5U1D-query.scw
PDB file : Tito_Scwrl_5U1D.pdb: