Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTTRIYVRASTKDQDAERALADLKNFALSIKGDFNEYIENESGTKLDRPVLNQLLDDSSNGDTLLVESVDRLSRLSQNDFEVLKGRIKDKGLKLVVADLPTTHMLVNSADNITSSILSLVNNMLIDLLATMARLDNDKRRERIKQGLERSGYKPTGKKADTAKHTRIKELNNKGLTKEEIAKAVGCGVATVYRVIKK
2GM5 Chain:C ((2-125))-ALFGYARVS-----LDIQVRALKDAGVKAN---RIFTDKAS---SDRKGLDLLRMKVKEGDVILVKKLDHLGRDTAD-MIQLIKEFDAQGVSIRFIDDGIST-------------DSYIGKMVVTILSAVAQAERQRILER-------------------------------------------------------


General information:
TITO was launched using:
RESULT:

Template: 2GM5.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 482 -39695 -82.35 -342.19
target 2D structure prediction score : 0.66
Monomeric hydrophicity matching model chain C : 0.68

3D Compatibility (PKB) : -82.35
2D Compatibility (Sec. Struct. Predict.) : 0.66
1D Compatibility (Hydrophobicity) : 0.68
QMean score : 0.406

(partial model without unconserved sides chains):
PDB file : Tito_2GM5.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-2GM5-query.scw
PDB file : Tito_Scwrl_2GM5.pdb: