Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMNMTFIVAVQLKDSIVVAVDNKYLTLKDKEKDHFEEHFSSKLYAWHSGIITGTGEHYVIDKAVRLFINSADADIEKLPLCLNISRQIREMEVGQHEQIQSSKLLYSQYSENGAKLFAIEPTEETGKYQRTEFKENDLIIWLFNPNIQSISGNLKTLYS-NPRPKVSFDRIEDWLDYYISAIAEIYEKQSCIDSWMSGSFDIFFQTEGEYFYKHIQNNPTVHLE
4DX8 Chain:H ((13-202))-----------EDAYVAVIRPKSLNSREYRAKSYEILLHEVPK-------KVLLETKLQSEITQGILDYVVETTKPINQGIRGKRVVLMKKFPLD----------GEKMGREASLFIVPSVVC--------------------PIFYCLQDIMRVCTHFATLTARMLIALDKWLDERHAQ---------------SHFIPALFRPSPLERIKTNVINPAYAT-


General information:
TITO was launched using:
RESULT:

Template: 4DX8.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain H - contact count / total energy / energy per contact / energy per residue : 670 -39707 -59.26 -251.31
target 2D structure prediction score : 0.37
Monomeric hydrophicity matching model chain H : 0.57

3D Compatibility (PKB) : -59.26
2D Compatibility (Sec. Struct. Predict.) : 0.37
1D Compatibility (Hydrophobicity) : 0.57
QMean score : 0.218

(partial model without unconserved sides chains):
PDB file : Tito_4DX8.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-4DX8-query.scw
PDB file : Tito_Scwrl_4DX8.pdb: