Modeling by threading (Tito software)
Unconserved sides chains calculation (Scwrl software)
Evaluation (QMean software)



Input alignment information:
Query sequenceMTYEYKSHIYLAETALNVKDLASQTAFYQQVIGLEILSQTETESILGLGGKVLVQLIQAQESGEVREHYGLYHLAILLPTRKALADVLKHLTDLQIPLVGGA-DHGYSEAIYLEDLEGNGIELYRDKPVSTWDIREDGRIIGVTEALAAQDIYELGERVEP-FILAEGTRMGHIHLSVKDSRKSSQFYQKVLGLEDKFSVP-----SASWIAAGDYHHHLAVNEWRGKGLASRKQGLPGLAYYVIEVAHKKELLTIAQRAQEVDAPIKWM-------TSSKLEITDSDGIVTRIRLAR
3LM4 Chain:C ((4-273))--DARFDIAHLARAELFSPKPQETLDFFTKFLGMYVTHREGQSVYLRGYEDPYPWSLKITE----APEAGMGHAAMRTSSPEALERRAKSLTDGNVDGTWSEDQFGYGKTFEYQSPDGHNLQLLWEAEKYVA---PP--EL---RSKI-LTRPS-----KKPLQGIPVKRIDHLNLMSSDVTAVKDSFERHLGFRTTERVVDGNVEIGAWMSSNLLGHEVACMRDM-------TGGHGKLHHLAFFYGTGQHNIDAVEMFRDYDIQIEAGPDKHGITQSQFLYVFEPGGNRIELFGE-


General information:
TITO was launched using:
RESULT:

Template: 3LM4.pdb
Alignment : align.pir
Tito was launched with SMD and SCWRL
Tito text output
Monomeric PKB - chain C - contact count / total energy / energy per contact / energy per residue : 1347 -11031 -8.19 -43.09
target 2D structure prediction score : 0.56
Monomeric hydrophicity matching model chain C : 0.65

3D Compatibility (PKB) : -8.19
2D Compatibility (Sec. Struct. Predict.) : 0.56
1D Compatibility (Hydrophobicity) : 0.65
QMean score : 0.353

(partial model without unconserved sides chains):
PDB file : Tito_3LM4.pdb:





(Unconserved sides chains are recalculated) :
Sequence: align-3LM4-query.scw
PDB file : Tito_Scwrl_3LM4.pdb: